PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26379.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 323aa    MW: 36640.3 Da    PI: 7.5492
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26379.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.91.1e-23230283154
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                 k r++Wt++LHe F+  v++LGG+ekA Pk+il++mk + L+++hvkSHLQ+ R
  KHN26379.1 230 KRRIKWTKDLHEPFMMIVNSLGGPEKAKPKAILDMMKSDLLSISHVKSHLQMQR 283
                 689*************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-20228284IPR009057Homeodomain-like
SuperFamilySSF466895.73E-10229283IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-18230284IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MYQYSSQMYG TDWESYMEIS NLAKVVGSEQ LSFEPTKSPF NIVTTPLQTP PGFCASATKS  60
LVSFQAQQQH THQHQSEVPA WCFEFPKTTT MTTTTADSHM LNIRQASGDN FTTTITIKQD  120
PPSSQFTSSL CRPVAESFFS SSGADCRSSS EKYFKIASYS EKHSCIQPDS IQYYDLYSQE  180
DDTLLRDDAA TDEGPLEISF QRNQREKQAP HRLCGVACVA SSNSASRRGK RRIKWTKDLH  240
EPFMMIVNSL GGPEKAKPKA ILDMMKSDLL SISHVKSHLQ MQRNLHTLIQ QQNQQLKVML  300
DYQKERTKLE KTLYTEIEAT VPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-14229283155Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-14229283155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-14229283155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-14229283155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-14229283155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-14229283155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-14229283155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-14229283155Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26379.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576853.11e-163protein PHOSPHATE STARVATION RESPONSE 3
RefseqXP_028225378.11e-163protein PHOSPHATE STARVATION RESPONSE 3-like
TrEMBLA0A0B2R2A90.0A0A0B2R2A9_GLYSO; Putative transcription factor KAN3
STRINGGLYMA19G32841.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144901016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.11e-16phosphate starvation response 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]