PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17244.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 362aa    MW: 41051.6 Da    PI: 4.5273
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17244.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34441352102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++++ed+++++++sws   nsfvv+d+++f+ ++Lp+yFkh nf+SF+RQLn YgF+kv+ ++         weF+++ F +g+++ll++ik
    KHN17244.1  44 FLSKIFDMVEDSSTDSIVSWSMARNSFVVWDSHKFSADILPRYFKHGNFSSFIRQLNAYGFRKVDPDR---------WEFANEGFLAGQRHLLKTIK 131
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
    KHN17244.1 132 RRRN 135
                   *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3640133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-5740133IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.21E-3340133IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.4E-184467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3044133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-1895107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MERIRVKEEE AVTCGGGSSS SSSSSSSFSP QPMEGLHEVG PPPFLSKIFD MVEDSSTDSI  60
VSWSMARNSF VVWDSHKFSA DILPRYFKHG NFSSFIRQLN AYGFRKVDPD RWEFANEGFL  120
AGQRHLLKTI KRRRNVSQSL QQKGGSGACV EVGEFGLEGE LERLKRDRNI LMAEIVRLRH  180
QQLNSREQLN SMETRLQATE KKQQQMMSFL AKALSNPSFT KQLVQKTPQS REVLGVEINR  240
KRRLTASPSV ENLQQDDQDL ATLDYPSHDR DLATMETDMD TFFSPAYDNE LSSETNEPAS  300
ISVEDTILED FLNKDLVTWN PEDEVIIGDS SQVDVPVEDL VANPDDWSEQ LQDLVDHMDY  360
LG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-244213318120Heat shock factor protein 1
5d5u_B4e-244213327129Heat shock factor protein 1
5d5v_B4e-244213327129Heat shock factor protein 1
5d5v_D4e-244213327129Heat shock factor protein 1
5hdg_A4e-24421338110Heat shock factor protein 1
5hdn_A4e-24421338110Heat shock factor protein 1
5hdn_B4e-24421338110Heat shock factor protein 1
5hdn_C4e-24421338110Heat shock factor protein 1
5hdn_D4e-24421338110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17244.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311610.0KT031161.1 Glycine max clone HN_CCL_33 heat shock transcription factor (Glyma14g11030.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304416.20.0heat stress transcription factor Hsf-30
RefseqXP_028199856.10.0heat stress transcription factor A-2-like
SwissprotP411521e-123HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A0K2CTP70.0A0A0K2CTP7_SOYBN; Heat shock transcription factor
STRINGGLYMA14G11030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-115heat shock transcription factor A2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]