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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN11420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CO-like | ||||||||
Protein Properties | Length: 417aa MW: 46677.1 Da PI: 5.6756 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26 | 1.9e-08 | 17 | 60 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k+++++C ++ +lC+ C ++ H H++v KHN11420.1 17 ARACDGCITKRARWYCAADDAFLCQACDSSVHLAnplarrHERV 60 578*****************************444666667766 PP | |||||||
2 | CCT | 68.1 | 2.4e-23 | 362 | 405 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a KHN11420.1 362 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 405 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.1E-9 | 15 | 62 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.665 | 15 | 62 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.6E-6 | 17 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.17E-9 | 18 | 62 | No hit | No description |
PROSITE profile | PS51017 | 16.083 | 362 | 404 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.9E-18 | 362 | 404 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MSSATKNAAN AVGGKTARAC DGCITKRARW YCAADDAFLC QACDSSVHLA NPLARRHERV 60 RLKTASYKST DERRQPPTWH TKKPRTPRHG KHSRNNNPFH LVPEEGSEEA NSHDENEEQL 120 VYRVPIVDPF VAELCGTNSS PSSVTSTDQG VVAAAAASAE VEYKGIQSND FCSNSNEIEN 180 LHGMLPSDAE LAEFAADVES FLGRGLENKC VGMEELGLVD TKEEECSVGS GKVKVEEEES 240 PLMEMDMGRD DQSFELSFDY ETCEEVKEMK VSDLELGNEL GEMKENDDDE VKRKKVSLQL 300 DYEAIIIAWA SQKSPWTTAD KQNLDPDECW HQCMGSCGTA FHHPYGELGG FGIHSVIVDG 360 GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRASFAPP TFPLLNK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 372 | 388 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN11420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM068904 | 0.0 | HM068904.1 Glycine max CONSTANS-like zinc finger protein (COL22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028219641.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | A0A3Q7YU13 | 0.0 | A0A3Q7YU13_SOYBN; CONSTANS-like zinc finger protein | ||||
TrEMBL | A0A445F3R5 | 0.0 | A0A445F3R5_GLYSO; Zinc finger protein CONSTANS-LIKE 16 | ||||
STRING | GLYMA20G24940.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68520.1 | 7e-99 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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