PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN06475.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 853aa MW: 93971.1 Da PI: 6.4602 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 24 | 81 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps ++r+++ +++ +++++q+kvWFqNrR +ek+ KHN06475.1 24 YVRYTPEQVEALERVYVECPKPSSSRRQQIIRECpllaNIETKQIKVWFQNRRCREKQ 81 6789****************************************************97 PP | |||||||
2 | START | 170.6 | 1e-53 | 174 | 382 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 +a+e++ e+++ka+ ++ +Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +l v+s g g+++lm++++ KHN06475.1 174 IAQETLVEFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLNVLSVVSAGngGTIELMYMQT 271 5788999***************************************************.8888888888****************************** PP TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS START 99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193 +a+++l++ Rdf+++Ry+ +l++g++vi+++S++s + p+ s+++Rae+lpSg+li+++++g+s +++v+hvdl+ ++++++lr+l++s + ++ KHN06475.1 272 YAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgpaASNFIRAEMLPSGYLIRSCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESPKFLAQ 370 ****************************************9999******************************************************* PP HHHHHHTXXXXX CS START 194 ktwvatlqrqce 205 k ++a+l++ ++ KHN06475.1 371 KLTTAALRHARQ 382 *******99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 6.0E-16 | 20 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.92E-16 | 23 | 83 | No hit | No description |
SuperFamily | SSF46689 | 5.13E-16 | 23 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.7E-16 | 24 | 81 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-17 | 25 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.965 | 26 | 82 | IPR001356 | Homeobox domain |
CDD | cd14686 | 2.92E-6 | 75 | 114 | No hit | No description |
PROSITE profile | PS50848 | 25.143 | 164 | 364 | IPR002913 | START domain |
CDD | cd08875 | 8.96E-68 | 168 | 384 | No hit | No description |
SMART | SM00234 | 9.7E-50 | 173 | 383 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.6E-20 | 173 | 356 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.71E-35 | 174 | 385 | No hit | No description |
Pfam | PF01852 | 3.6E-51 | 174 | 382 | IPR002913 | START domain |
Pfam | PF08670 | 2.6E-48 | 708 | 852 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 853 aa Download sequence Send to blast |
MALCMQSQQR DSASNKLLMD CGKYVRYTPE QVEALERVYV ECPKPSSSRR QQIIRECPLL 60 ANIETKQIKV WFQNRRCREK QRKEASRLQT VNRKLSSMNK LLMEENDRLQ KQVSQLVYDN 120 GFMKQQIHTA SATTTTTTDN SCESVVVSGQ HQPQNPKTQH PQWDANNPAG LLAIAQETLV 180 EFLSKATGTA VNWVQMIGMK PGPDSIGIVA VSRNCSGVAA RACGLVSLEP TKVAEILKDR 240 PSWYRDCRCL NVLSVVSAGN GGTIELMYMQ TYAPTTLAAA RDFWTLRYTT SLEDGSLVIC 300 ERSLTSSTGG PTGPAASNFI RAEMLPSGYL IRSCEGGGSI IHIVDHVDLD VWSVPEVLRP 360 LYESPKFLAQ KLTTAALRHA RQIAQESSGD VHYGGGRQPA VLRTFSQRLC KGFNDAVNGF 420 VDDGWSLMGN DGVEDVTIAI NSSPNKFFGS HYNTSMLPAF GGGVMCAKAS MLLQNVPPAL 480 LVRFLREHRS EWANYEVDAY SSACLKASPY AVPCARPSGF PSSHVIIPLA HTIEHEEFLE 540 VVRIEGNAFP PDDVAWACDM YLMQLCSGID ENAIGACAQL VFAPIDESFA DDALLLPSGF 600 RIIPLDPKTD GLASTRTLDL ASTLETGSGN ARSAGESDSN NYNLRSVLTI AFQFTFENHL 660 RDNVTVMARQ HVHNVVRSIQ RVAMAIAPSR LSTQLGPKSF PGPPEALTLA RWICRSYRLH 720 TCTELFSVES TSGDAILKQL WHHPDAILCC SVKTDASPVF TFANQAGLDM LETTLVALQD 780 IMLDKVLDEA GRKVLCIEFS KIMQQGFAYL PAGICVSSMN RPVSYEQAIA WKVLDDDDSN 840 HCLAFVFMNW SFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN06475.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028232949.1 | 0.0 | homeobox-leucine zipper protein ATHB-14-like | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A445KPT0 | 0.0 | A0A445KPT0_GLYSO; Homeobox-leucine zipper protein HOX32 | ||||
STRING | GLYMA05G30000.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5176 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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