PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44903.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Trihelix
Protein Properties Length: 384aa    MW: 42767.8 Da    PI: 8.7566
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44903.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.18.4e-1719108273
    trihelix   2 WtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                 Wt +e+++Liea++ ++er  r++                   ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r +
  KFK44903.1  19 WTLNETMVLIEAKKMDDERRMRRSiglpateqqqdssrssnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 108
                 **************55555555444444455555555555558999****************************************9844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.761193IPR017877Myb-like domain
PfamPF138376.6E-1318109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPATEQ QQDSSRSSNK  60
PAELRWKWIE DYCWRKGCMR SQNQCNDKWD NLMRDYKKVR EYERRRVESS IHGESSSAGG  120
SETVSYWSME KSVRKERNLP SNMLPQTYQA LFEVVESKTL TTSTAAATAL TAVLGSGNGS  180
GGGQVQKVIQ QSLGFVVPPK HQMSQPYVML PIPPPPPPQT SQPLQPLFLP PPPQLPSFHD  240
QPILPTKDSS SDSDTSEYSD TSPAKRRRTM PTTTAGPSGV GGGRNAEEST NDETAVAVAL  300
SRSASVIANA IRESEERQDR RHQEVMSLQE RRLKIEESNV EINREGMNGL VEAINKLASS  360
IFSLASTSTS SRHNNNQHQG GPTQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44903.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306413.11e-167uncharacterized protein LOC17897741 isoform X2
TrEMBLA0A087HS010.0A0A087HS01_ARAAL; Uncharacterized protein
STRINGA0A087HS010.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.11e-118Trihelix family protein