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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK44551.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | NAC | ||||||||
Protein Properties | Length: 458aa MW: 51541.8 Da PI: 4.5452 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.6 | 2.2e-31 | 59 | 193 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWka 85 lp+G++F+P+d e++++ L+k + g + + +e+i++vd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + +W++ KFK44551.1 59 LPRGVKFDPSDPEIIWHLLAKTgLLGLSshpfI--DEFIPTVDqddgICYTHPKNLP-GVKHDGTVSHFFHRAIKAYNTGTRKRRKIHdddigDVRWHK 154 799************999988754444443232..344666655567**********.677788999******************85445544899*** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg++k+v+ +g + g+kk++v+y g+a kt+Wvmh+y+l KFK44551.1 155 TGRTKPVVL-DGVQRGCKKIMVLYGGKAV---KTNWVMHQYHL 193 *********.99************76665...6********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-38 | 44 | 212 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.885 | 59 | 212 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-12 | 60 | 193 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MASRRSWLVD SNRIATKIKS ASASSDPRQV VWNSNPSRHC PNCHHVIDNS DEVDDWPGLP 60 RGVKFDPSDP EIIWHLLAKT GLLGLSSHPF IDEFIPTVDQ DDGICYTHPK NLPGVKHDGT 120 VSHFFHRAIK AYNTGTRKRR KIHDDDIGDV RWHKTGRTKP VVLDGVQRGC KKIMVLYGGK 180 AVKTNWVMHQ YHLGTDEDEK EGDYVVSKIF YQQPQQQAIA KQGDKGEQEV SEDIFSAMTP 240 KADPVTPKLF TPEPQQAVRL YSDSHFADDY ATSHNYVTAP EISLAETSEA MYIEDEVQGI 300 QRNPERPSSE DEPEPEPEPE PGIENRVSEM IDGNEDREKD KNDENQGEED PNWLDSGGSQ 360 FILDSQQLVE ALSLCDDLLQ VGSQENTNNG GGLRNKQPCF ADYAHLGTED FKRDLEDCQK 420 IVLDPSNIEL DTPPEFRLSQ LEFGSQESFL AWGTGKTD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK44551.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415888.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A087HQZ9 | 0.0 | A0A087HQZ9_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HQZ9 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9707 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |