PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38646.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 346aa    MW: 40624.4 Da    PI: 8.7061
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38646.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.6e-1915106196
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 ffkv+     ++s+ lv+p  f+ ++ ++k+ + +++l de gr+W v+ + + + +r  +v+ kGW+ F+k++ L+ gDf+vF +dg+s+f   v++
  KFK38646.1  15 FFKVF--LPEFSSHELVIPPAFI-DI-LEKPLPNEVSLLDEIGRVWCVETKTQDTEERfrVVFDKGWNVFAKDQSLEFGDFLVFNYDGDSRF--SVTI 106
                 88999..889999**********.66.3456999****************8855555567****************************9999..5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-217109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-199110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.1713110IPR003340B3 DNA binding domain
CDDcd100171.69E-1515107No hitNo description
SMARTSM010196.0E-2015110IPR003340B3 DNA binding domain
PfamPF023629.5E-1815107IPR003340B3 DNA binding domain
SuperFamilySSF1019361.65E-12228313IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-12228313IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.22231331IPR003340B3 DNA binding domain
CDDcd100171.90E-6232301No hitNo description
SMARTSM010196.3E-9234331IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MVETVSSYER KDLEFFKVFL PEFSSHELVI PPAFIDILEK PLPNEVSLLD EIGRVWCVET  60
KTQDTEERFR VVFDKGWNVF AKDQSLEFGD FLVFNYDGDS RFSVTIYAND GIKKDLGITE  120
RSRVSVDKEP VDSFTKPERR KDCGKKRPVD SFTKPERRKD CGKKRKRKQD SVKEEPIDDL  180
VENEPEYFST SKAKRQHREK TRREDNRVRD PCGISSRDPE KKQRRFEEPK NPHFLRNITD  240
SSLQKLEIPI TFLKSNGIEL EEDIELCDDN GKKWPMKIVN YVRGVKFSSE SWVCFCKSHK  300
LMKTTNKFLF EFIVASNGRC NEIRIRIVSG RLLTTMTKSQ YQVLVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-1261102102At1g16640
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144166KKRPVDSFTKPERRKDCGKKRKR
2162167KKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38646.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866723.11e-156putative B3 domain-containing protein At5g66980
SwissprotQ9FGD21e-153Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLA0A087H9440.0A0A087H944_ARAAL; Uncharacterized protein
STRINGA0A087H9440.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-141B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]