 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
KFK31383.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 276aa MW: 30895.6 Da PI: 8.1415 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KFK31383.1 | genome | MPIPBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.2 | 2.9e-18 | 126 | 180 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q Lee F+++++++ +++ LAkkl+Lt rqV vWFqNrRa+ k
KFK31383.1 126 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTK 180
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 120.6 | 8e-39 | 126 | 215 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlsk+q+++LEe+F+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +Lr +l
KFK31383.1 126 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMDLR-AL 215
69*************************************************************************************9.55 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009641 | Biological Process | shade avoidance |
| GO:0009734 | Biological Process | auxin-activated signaling pathway |
| GO:0009826 | Biological Process | unidimensional cell growth |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MMMGKEDLGL SLSLGLSQNH KPFNPNSSSP NNNLQRFPWN QAFVSTTDLR KIDVNSHPSM 60
VDCEEETGVS SPNSTISSTI SGKRSEREGF SGTGVGSGDD HDELTPDRGY SRGTSDEEED 120
GGETSRKKLR LSKDQSAFLE ETFKEHNTLN PKQKLALAKK LNLTARQVEV WFQNRRARTK 180
LKQTEVDCEY LKRCVEKLTE ENRRLQKEAM DLRALKMSPQ FYGQMTPPTT LIMCPSCERV 240
GGPSSSHHRP VPINPWVACA GQVAHGLNFE ALRPRS
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 124 | 130 | SRKKLRL |
| 2 | 174 | 182 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G47370.1 | 1e-136 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |
