PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

LBD

Protein Properties

Length: 228aa MW: 24112.2 Da PI: 7.4741

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK30604.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.6	2e-38	18	118	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++C++ap+f +eq +++f +vhk+FGasnv+kll+ +pe++r+da+ ++++eA+ r+rdPvyG+v++i +lqqq+ +l++el++l+ KFK30604.1 18 PCGACKFLRRKCVSGCIFAPHFDSEQgAAHFSAVHKVFGASNVSKLLNIVPEHKRPDAVVCICFEAHSRLRDPVYGCVSHIVSLQQQVLSLQSELSYLQ 116 7*********************9989******************************************************************999 PP DUF260 99 ee 100 ++ KFK30604.1 117 AH 118 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.904	17	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-37	18	116	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MSSGVNPSSS GGGGGSGPCG ACKFLRRKCV SGCIFAPHFD SEQGAAHFSA VHKVFGASNV 60 SKLLNIVPEH KRPDAVVCIC FEAHSRLRDP VYGCVSHIVS LQQQVLSLQS ELSYLQAHLA 120 TLELPQPPPA PATSSCSPPP FSISDLPTIT TSSVYDLSSI FEPMSSTWAM QQQQPRPLDQ 180 YYGVPSSSNI GGGGEFQALA REFIHGGQMP TQPPPGTSGS ASRVIKRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	14	119	7	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	14	119	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK30604.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006396221.1	1e-116	LOB domain-containing protein 30
Swissprot	O81323	1e-112	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A087GL52	1e-165	A0A087GL52_ARAAL; Uncharacterized protein
STRING	A0A087GL52	1e-165	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	7e-83	LBD family protein

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]