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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | KDD75135.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 185aa MW: 20030.6 Da PI: 10.7995 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 46 | 1.2e-14 | 25 | 65 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+W+ eEd +l +a+++lG++ W+ I++ +g Rt++ +k+rw+
KDD75135.1 25 SWSGEEDVRLMEAHARLGNR-WTEISKIFG-DRTDNAVKNRWH 65
7*******************.*********.***********8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF46689 | 4.69E-22 | 1 | 72 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50090 | 4.693 | 1 | 17 | IPR017877 | Myb-like domain |
| Gene3D | G3DSA:1.10.10.60 | 5.7E-19 | 2 | 65 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 19.735 | 18 | 72 | IPR017930 | Myb domain |
| SMART | SM00717 | 1.1E-12 | 22 | 70 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 1.8E-13 | 24 | 65 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 3.46E-10 | 25 | 68 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 185 aa Download sequence Send to blast |
MRTKTSKQCR RRWKNFLTIN AKTCSWSGEE DVRLMEAHAR LGNRWTEISK IFGDRTDNAV 60 KNRWHALVRK HPDLERPPGG HPGGGGVSGG QPSPYANGEL APAHAYGGAM RQHSPLGMAG 120 TAAELGSPVL RGTKRSLESS PLDGPRGPTR GPGPAAPHHP PASAPLSIRV SRDFLTPWEL 180 ELADQ |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1a5j_A | 2e-17 | 1 | 73 | 37 | 109 | B-MYB |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011399211.1 | 2e-44 | Myb-related protein B | ||||
| TrEMBL | A0A059LM15 | 1e-132 | A0A059LM15_9CHLO; Uncharacterized protein (Fragment) | ||||
| STRING | A0A087SKR1 | 8e-44 | (Auxenochlorella protothecoides) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Chlorophytae | OGCP15 | 16 | 114 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G14350.2 | 7e-19 | MYB family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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