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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S28430.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | B3 | ||||||||
Protein Properties | Length: 149aa MW: 17109 Da PI: 11.094 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.6 | 3.5e-16 | 11 | 90 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ffkvl + + ++ l +p f+++++++ +k tl+ +g+s ev++ + +++y++++GW+ Fvk +gL++ Df+vF l+++ Jcr4S28430.20 11 FFKVL--LSDFMEK-LKIPPAFVKKFKKI--MPKAPTLKPNEGKSCEVTI--VNEGDSYFFKRGWNTFVKNQGLETSDFLVFNLVDE 90 78888..5555555.99*********877..56679999***********..99*****************************9864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-17 | 6 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-18 | 7 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.503 | 8 | 101 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.94E-11 | 9 | 90 | No hit | No description |
SMART | SM01019 | 0.0018 | 11 | 97 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-14 | 11 | 90 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MARKPKQVPT FFKVLLSDFM EKLKIPPAFV KKFKKIMPKA PTLKPNEGKS CEVTIVNEGD 60 SYFFKRGWNT FVKNQGLETS DFLVFNLVDE ITFQSGNMSR AGACWKARRA RDFPLRARDL 120 SRNHVDKAMS RHRIADLRPI QFGTPATGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079138.1 | 7e-62 | B3 domain-containing protein Os01g0723500 isoform X1 | ||||
TrEMBL | A0A067KHW4 | 2e-60 | A0A067KHW4_JATCU; Uncharacterized protein | ||||
STRING | EOX91274 | 1e-27 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 9e-10 | B3 family protein |