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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S22831.10 | ||||||||
Common Name | JCGZ_03725, LOC105632776 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NF-YB | ||||||||
Protein Properties | Length: 221aa MW: 25067.9 Da PI: 6.9361 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 175.3 | 6.1e-55 | 42 | 137 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianv+rimkkv Pan+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv plk+yl kyre+egek Jcr4S22831.10 42 KEQDRFLPIANVGRIMKKVSPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVVPLKTYLVKYREVEGEK 137 89*******************************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.2E-52 | 37 | 162 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.34E-39 | 44 | 162 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.0E-27 | 47 | 111 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.6E-18 | 75 | 93 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 78 | 94 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 3.6E-18 | 94 | 112 | No hit | No description |
PRINTS | PR00615 | 3.6E-18 | 113 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEEESHASAP NGLNRGSPES PCLKNNNKNN NNGSSNNNNN NKEQDRFLPI ANVGRIMKKV 60 SPANGKISKD AKETVQECVS EFISFVTGEA SDKCQREKRK TINGDDIIWA ITTLGFEDYV 120 VPLKTYLVKY REVEGEKLNI PKQQRTEHRL QQHQQPKQEQ QEQSLLPYNS VYSSTSSLMS 180 QPPFVAADQP FSLTFSPNSI QKQLQQQDQI DSIGHWQDMK L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 5e-43 | 42 | 132 | 7 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012070610.1 | 1e-165 | nuclear transcription factor Y subunit B-7 | ||||
Swissprot | Q9SIT9 | 2e-70 | NFYB7_ARATH; Nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | A0A067KWS3 | 1e-163 | A0A067KWS3_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_024313m | 1e-112 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13249 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G13570.1 | 6e-64 | nuclear factor Y, subunit B7 |
Link Out ? help Back to Top | |
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Entrez Gene | 105632776 |
Publications ? help Back to Top | |||
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