PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S16874.10

Common Name

JCGZ_08841

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 58aa MW: 6988.97 Da PI: 4.0932

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S16874.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	52.2	2.1e-16	4	56	1	49
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk 49 l+pGfrF Pt+eel+++yL++k+egk+ l l++vi+ +diy+++PwdLp+ Jcr4S16874.10 4 LAPGFRFYPTEEELITFYLQNKLEGKRedlnLVLDRVIPVLDIYDFDPWDLPR 56 679**********************7766555668************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.16E-16	3	57	IPR003441	NAC domain
PROSITE profile	PS51005	19.632	4	58	IPR003441	NAC domain
Pfam	PF02365	2.4E-7	6	51	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 58 aa Download sequence Send to blast
MEDLAPGFRF YPTEEELITF YLQNKLEGKR EDLNLVLDRV IPVLDIYDFD PWDLPRKT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775319	4e-94	KC775319.1 Jatropha curcas NAC transcription factor 041 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074436.1	6e-32	NAC domain-containing protein 90
Swissprot	O49697	3e-14	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A067KJA3	1e-31	A0A067KJA3_JATCU; Uncharacterized protein
STRING	EOY08332	7e-27	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-16	NAC domain containing protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]