PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S11783.10

Common Name

JCGZ_10626, LOC105636098

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 304aa MW: 34560.7 Da PI: 6.1705

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S11783.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.8	2.2e-53	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtd+elv +yL++kv+g ++el evi+ +d+yk++Pw+Lp k + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v++ Jcr4S11783.10 6 LPPGFRFHPTDDELVGYYLHRKVQGLEIEL-EVIPVIDLYKFDPWELPdKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVC 100 79**************************.99**********96434556788********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g +ktLvfy+grap g +tdWvmheyrl Jcr4S11783.10 101 -QSSVTGYRKTLVFYRGRAPLGDRTDWVMHEYRL 133 .9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-61	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.82	6	156	IPR003441	NAC domain
Pfam	PF02365	2.6E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008283	Biological Process	cell proliferation
GO:0071365	Biological Process	cellular response to auxin stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MGGASLPPGF RFHPTDDELV GYYLHRKVQG LEIELEVIPV IDLYKFDPWE LPDKSFLPKR 60 DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSSVTGYRKT LVFYRGRAPL 120 GDRTDWVMHE YRLCDDISRG SSNFQGAFAL CRVVKKNEQG HKTGDSLVEH KAKKIASSSS 180 NVDLTCTVTS NEQLSISGDI SSQGSYLQSE SRYSSPIASP YQITPMTKFD PPPTESNFSS 240 IWVSPDLILD SSKDYPQVSE YLPQHEYPWF SSYSNFTGEI EHEPVDCIGY MSPYLGFNGN 300 EDLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-55	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-55	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-55	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-55	5	162	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	7e-55	5	162	19	174	NAC domain-containing protein 19
3swm_B	7e-55	5	162	19	174	NAC domain-containing protein 19
3swm_C	7e-55	5	162	19	174	NAC domain-containing protein 19
3swm_D	7e-55	5	162	19	174	NAC domain-containing protein 19
3swp_A	7e-55	5	162	19	174	NAC domain-containing protein 19
3swp_B	7e-55	5	162	19	174	NAC domain-containing protein 19
3swp_C	7e-55	5	162	19	174	NAC domain-containing protein 19
3swp_D	7e-55	5	162	19	174	NAC domain-containing protein 19
4dul_A	7e-55	5	162	16	171	NAC domain-containing protein 19
4dul_B	7e-55	5	162	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00439	DAP	Transfer from AT4G17980	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775323	0.0	KC775323.1 Jatropha curcas NAC transcription factor 045 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074656.1	0.0	NAC domain-containing protein 86
Swissprot	O49697	1e-105	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	R4NEU8	0.0	R4NEU8_JATCU; NAC transcription factor 045
STRING	XP_002519841.1	1e-169	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6722	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-108	NAC domain containing protein 71

Link Out ? help Back to Top
Entrez Gene	105636098

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]