PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S08475.20 | ||||||||
Common Name | JCGZ_26810, LOC105630160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | TCP | ||||||||
Protein Properties | Length: 313aa MW: 33544.2 Da PI: 9.5476 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.7 | 1.4e-36 | 71 | 168 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......... 88 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++ +as+ + s+s+ s + Jcr4S08475.20 71 PKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTVPASFLaA-AGGSVSQPGTSLSaglnqkide 165 6999***********************************************************9999988843.4443333322222244333334 PP TCP 89 ..k 89 Jcr4S08475.20 166 lgG 168 440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.5E-31 | 75 | 223 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 76 | 130 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MDPKGSNSKN QHELPNFLTH PPPQTLQQQQ QNQNQSQQQQ QGSMGENKPA EIKDFQIVIA 60 DKEEQKKQLG PKRSSNKDRH TKVEGRGRRI RMPALCAARI FQLTRELGHK SDGETIQWLL 120 QQAEPSIIAA TGTGTVPASF LAAAGGSVSQ PGTSLSAGLN QKIDELGGSS SSRTSWAMVG 180 GNLGRPHHVA TTGLWPPVGG FGFQSSSTTG PATTNLGSES STSYLQKIGF PGFDLPGNNM 240 GPMSFTSILA GSNQQIPGLE LGLSQDGHIG VLNPQALSQI YQQMGQARVH QQQQQQQHQQ 300 QNPAKDDSQG SGQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012067277.1 | 0.0 | transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 5e-89 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A067L058 | 0.0 | A0A067L058_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_012485m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 8e-83 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105630160 |