PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S07198.10

Common Name

JCGZ_18952, LOC105643496

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 443aa MW: 47438.8 Da PI: 6.3719

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S07198.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	46.3	9.3e-15	1	29	27	55
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 A+Pk+ilelm+v+gLt+e+v+SHLQkYRl Jcr4S07198.10 1 AVPKKILELMNVPGLTRENVASHLQKYRL 29 89**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01557	1.8E-12	1	29	IPR006447	Myb domain, plants
SuperFamily	SSF46689	8.24E-8	1	33	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-14	1	34	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
AVPKKILELM NVPGLTRENV ASHLQKYRLY LRRLSGVSQH QNNLSNPFIS PQEATYGPLS 60 SLNGLDLQTL AATGQIPAQS LATLQAAGLG RSAVKARMPM PIVDQRNLFS FENPKLRFGD 120 GQQQQLNSGK QMNLLHGIPT TMEPKQLANL HHSAQSLGNM NIQVNNHGGQ SNSLLMQMSQ 180 SQSRGQILNE TTGCLVSTLP SSAGQPVISN TIAGGVLARN GLAENGRGTG YNPVSQSPSM 240 LNFPLNNTAE LSGSSFPLGN SPGISSLTSK GAFQEDVNSE IKGSVGFIPS YDIFSDLNQH 300 KSHDWELQNV GMTFIASHQT NSLESNLDVG PSVLSHQGFS SSQGSAQNRN ISAVGKPMFS 360 AGDATDHVNP QSVGQHVNNF FADNSVRIKS ETVPDANCQA GLFPDQFGQE DLMSALLKQQ 420 QGSVGPTENE FDFDGYPMDN IPV

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

AVPKKILELM NVPGLTRENV ASHLQKYRLY LRRLSGVSQH QNNLSNPFIS PQEATYGPLS  60
SLNGLDLQTL AATGQIPAQS LATLQAAGLG RSAVKARMPM PIVDQRNLFS FENPKLRFGD  120
GQQQQLNSGK QMNLLHGIPT TMEPKQLANL HHSAQSLGNM NIQVNNHGGQ SNSLLMQMSQ  180
SQSRGQILNE TTGCLVSTLP SSAGQPVISN TIAGGVLARN GLAENGRGTG YNPVSQSPSM  240
LNFPLNNTAE LSGSSFPLGN SPGISSLTSK GAFQEDVNSE IKGSVGFIPS YDIFSDLNQH  300
KSHDWELQNV GMTFIASHQT NSLESNLDVG PSVLSHQGFS SSQGSAQNRN ISAVGKPMFS  360
AGDATDHVNP QSVGQHVNNF FADNSVRIKS ETVPDANCQA GLFPDQFGQE DLMSALLKQQ  420
QGSVGPTENE FDFDGYPMDN IPV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012084014.1	0.0	two-component response regulator ARR2
TrEMBL	A0A067JVF9	0.0	A0A067JVF9_JATCU; Two-component response regulator
STRING	cassava4.1_002952m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3958	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	3e-89	response regulator 2

Link Out ? help Back to Top
Entrez Gene	105643496

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]