PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05464.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 296aa    MW: 33770.3 Da    PI: 5.7228
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05464.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.6e-53201471128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    l+pGfrFhPtdeelv++yLk+kv++k++++ ++i+evdiyk ePwdL   +++k++++ewyfFs  d+ky +g r nrat++gyWkatgkd+ev +
  Jcr4S05464.30  20 LAPGFRFHPTDEELVSYYLKRKVSNKPVRF-NAIAEVDIYKNEPWDLAdkSRLKSRDQEWYFFSALDRKYGNGARMNRATTRGYWKATGKDREVRR 114
                    579************************999.89**************75348899999*************************************9 PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++l+ +kktLvf++grap g++t+Wvmheyrl
  Jcr4S05464.30 115 -DSQLIAMKKTLVFHSGRAPGGQRTNWVMHEYRL 147
                    .99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-5714157IPR003441NAC domain
PROSITE profilePS5100555.35420208IPR003441NAC domain
PfamPF023655.9E-2822147IPR003441NAC domain
SuperFamilySSF1019413.53E-57196208IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRDSLTPSP QPVAVKTTAL APGFRFHPTD EELVSYYLKR KVSNKPVRFN AIAEVDIYKN  60
EPWDLADKSR LKSRDQEWYF FSALDRKYGN GARMNRATTR GYWKATGKDR EVRRDSQLIA  120
MKKTLVFHSG RAPGGQRTNW VMHEYRLVDE ELDRIGALQV SLLAELLLMV YDDDDAGLLC  180
VKLFYRTGII SHWQVETDSY VLCRVFHKNN IGPPNGNRYA PFIEEEWDDG ETALIPGEEA  240
VEEVAGHDNC TEINRIEQVG CLSVKLECAE RIYEASVCAK YYSTEAQLSL LAMVSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-442014715140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753210.0KC775321.1 Jatropha curcas NAC transcription factor 043 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081000.11e-159NAC domain-containing protein 78 isoform X1
SwissprotQ9SQX91e-105NAC50_ARATH; NAC domain containing protein 50
TrEMBLR4NFV51e-157R4NFV5_JATCU; NAC transcription factor 043
STRINGcassava4.1_028254m1e-136(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81893241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-106NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]