PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S05283.50 | ||||||||
Common Name | JCGZ_17700, LOC105644550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ERF | ||||||||
Protein Properties | Length: 180aa MW: 20249.7 Da PI: 9.3647 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.2e-18 | 40 | 90 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r++lg+f++ae Aa a+++a+ +++g Jcr4S05283.50 40 SYRGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDSAEAAALAYDQAAFSMRG 90 69*******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.15E-18 | 39 | 99 | No hit | No description |
SMART | SM00380 | 2.7E-37 | 40 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-30 | 40 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-22 | 40 | 100 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.774 | 40 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-13 | 40 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MILFNVQPET TNKESSESNS STGATKGEEV TSKEERKEKS YRGVRKRPWG KYAAEIRDST 60 RNGIRVWLGT FDSAEAAALA YDQAAFSMRG SMAILNFPVE VVRESLQDIK YRFEDGCSPV 120 IALKKKHSMR RKSTSKKSKK ETNEVNTSRK QNVVVLEDLG AEYLEELLSS SCEGSPNPNW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-30 | 37 | 101 | 2 | 66 | ATERF1 |
3gcc_A | 5e-30 | 37 | 101 | 2 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012085329.1 | 1e-130 | ethylene-responsive transcription factor 1B | ||||
Swissprot | A0A3Q7I5Y9 | 4e-73 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A067JRM4 | 1e-129 | A0A067JRM4_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_015566m | 9e-82 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF311 | 33 | 199 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-41 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 105644550 |
Publications ? help Back to Top | |||
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