PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04633.40
Common NameJCGZ_05813, JHL10I11.10, LOC105650706
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family CO-like
Protein Properties Length: 366aa    MW: 41494.3 Da    PI: 6.8505
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04633.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.82.5e-0958104242
       zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                    + ++C+ +e+ ++ + C+ +   lC +C  e+H+       H +vp+
  Jcr4S04633.40  58 RVWVCTACENAPAAFTCQPDAAKLCINCDIEIHSAnplagrHIRVPI 104
                    5689*****************************66888888988876 PP
2CCT63.47.1e-22311354144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea++lRY+eKr+ RkFeK+irY +RKa+Ae+RpRvKGrF++++
  Jcr4S04633.40 311 REAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKK 354
                    9****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-71461IPR000315B-box-type zinc finger
PROSITE profilePS501199.5421461IPR000315B-box-type zinc finger
CDDcd000219.27E-71761No hitNo description
PROSITE profilePS501199.85557104IPR000315B-box-type zinc finger
PfamPF006431.5E-758104IPR000315B-box-type zinc finger
CDDcd000211.34E-560104No hitNo description
SMARTSM003362.9E-762104IPR000315B-box-type zinc finger
PROSITE profilePS5101716.311311353IPR010402CCT domain
PfamPF062031.2E-15311353IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0010018Biological Processfar-red light signaling pathway
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MLKINSDGYR YLTNWARSCD ACCAAPCTLY CHADSAYLCN NCDEYVHAAN SLALKHKRVW  60
VCTACENAPA AFTCQPDAAK LCINCDIEIH SANPLAGRHI RVPITPISGL ANTSSTTCLE  120
ESQAPLLHTE NDAMANKIVH ELEEDQTDSW LLLDLDNNDN QTNTGFTYIE DVDQYLNHIK  180
YNSCTNYHCQ DQINQQQLSS AHRGDICGDS IVPVQSFEAQ DQQEHHHQQQ QQETTFIDSG  240
YGASKASFVN TTSNSQKLHF QNQVPLSFTN AGYLLTSSNV PNSYSRFSKR TGDLLPNPSL  300
LVPVQFTPMN REAKVLRYRE KRRARKFEKQ IRYVTRKANA ENRPRVKGRF ARKKDMELEL  360
DQMFPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342353RPRVKGRFARKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0119650.0AP011965.1 Jatropha curcas DNA, clone: JHL10I11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012093039.10.0zinc finger protein CONSTANS-LIKE 2 isoform X1
TrEMBLE6NU540.0E6NU54_JATCU; JHL10I11.10 protein
STRINGcassava4.1_025867m1e-136(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.19e-73B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]