PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04149.70
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 568aa    MW: 64208.8 Da    PI: 6.9082
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04149.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.7e-13387433354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    + h + ErrRR++iN++fe Lr+llP+       K +Ka++L+++ eY+ sL
  Jcr4S04149.70 387 MHHMISERRRREKINESFEALRKLLPPE-----AKKDKASVLTRTREYLTSL 433
                    568899*********************6.....599*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.60E-13384438No hitNo description
PROSITE profilePS5088816.145384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-17385454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-17386451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-11388433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14390439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MDTVFSLISE EDRASHLRSL MEAIGCNYIC LWSYLPEPTR CLYFLDGYYH EENNQASPSS  60
GSLARRLFDE YRREMFFIVN DRVPGMAFIN KQPYRELTES EIGRMASVAV QRQFYREARI  120
KTAVFMGCRS GEIEMGWSRV QMNMEDTLRN WFSEDVPQQS PLAEFSQPMD PNRPSSSSSS  180
LKSLSMDSPE TSPFLFNIPT TPHISELPQD PTLQPIPTTS TAIQQVILRS LQPIQATTTS  240
PLQYSMQCLQ PLQTTATSPL QCSMQSLQPI PSAISPTPHQ QVMHAFALVR NTQLPTQESE  300
DAVMARAILA VLTSPSSSTS SSTPNLRQRA TAFKKYGSLP TTTTATRLAG LHSQSLLKRA  360
INYYRNLTIV RREHMQASRS TPTSSQMHHM ISERRRREKI NESFEALRKL LPPEAKKDKA  420
SVLTRTREYL TSLKAQVAEL SQRNQQLEAQ ALLPAIEITE EVSESSNERV EVRVALVSES  480
TPEGEERIID LQVFVRGGSA NISNIVIGIL EFLKHDRNVN LMSMEATTSA TESRLLNRVI  540
LRLRIEGNEW EESAFQEAVR RIVADLTH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392397ERRRRE
2393398RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020536340.10.0putative transcription factor bHLH041
TrEMBLA0A067KCA60.0A0A067KCA6_JATCU; Uncharacterized protein
STRINGcassava4.1_026020m1e-171(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-62bHLH family protein