PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04100.30
Common NameJCGZ_08302, LOC105634632
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bZIP
Protein Properties Length: 113aa    MW: 13497.4 Da    PI: 10.8796
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04100.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.58.8e-112368550
                   CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
                   ++ +r+q+NRe+ArrsR RK+++++ L + + +L+ eN + +  l+
  Jcr4S04100.30 23 RKRKRMQSNRESARRSRMRKRKQLDDLMKQMTQLKMENNEIIISLN 68
                   6789**********************************98776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.8E-111983IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.5E-82062No hitNo description
PROSITE profilePS5021710.142163IPR004827Basic-leucine zipper domain
PfamPF001701.6E-82368IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.87E-102374No hitNo description
CDDcd147024.59E-122474No hitNo description
PROSITE patternPS0003602641IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MASSSSRRRS SSEEDLWQIM DQRKRKRMQS NRESARRSRM RKRKQLDDLM KQMTQLKMEN  60
NEIIISLNSK TQLLFNFEAE NSILRGQVSE ITHRLESLNE IINYLNGVFE TVM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12443RKRMQSNRESARRSRMRKRK
23944MRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223601.16e-41bZIP transcription factor 11
RefseqXP_008221357.16e-41PREDICTED: bZIP transcription factor 53
SwissprotC0Z2L52e-31BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A067KMJ31e-73A0A067KMJ3_JATCU; Uncharacterized protein
STRINGXP_008221357.12e-40(Prunus mume)
STRINGEMJ248002e-40(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.11e-20G-box binding factor 6
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]