PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S03335.20

Common Name

JCGZ_12308

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Protein Properties

Length: 291aa MW: 34105 Da PI: 10.5044

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S03335.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.8	6.4e-16	5	70	30	99
..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ s+ tl+d +g+ W+v l +k+ + +++kGW+eFv+ + L + Df++Fk++g+sef +vkvf + Jcr4S03335.20 5 QTISQNATLKDYTGKIWDVHL--QKTETGLIIGKGWQEFVHHHSLVDADFLLFKYNGNSEF--YVKVFGR 70 4577899************..******************************9999..*9987 PP
2	B3	34.2	4.5e-11	204	258	32	87
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + l+de+g+ W vk++y kk+gr+++ +GW +F + +++ gD ++F+l+ + Jcr4S03335.20 204 LQENTNLRDERGKLWPVKVNY-KKDGRITINDGWLDFHRKHNVAMGDKIIFELMPT 258 3346899**********65.5556899*********************9754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.831	1	71	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0078	4	71	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.4E-15	5	71	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.9E-13	5	70	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.14E-16	6	72	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.65E-12	7	68	No hit	No description
Gene3D	G3DSA:2.40.330.10	4.2E-16	172	259	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.46E-16	172	258	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.62E-10	176	263	No hit	No description
SMART	SM01019	0.013	178	266	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.9E-9	200	258	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.433	210	272	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MRVNQTISQN ATLKDYTGKI WDVHLQKTET GLIIGKGWQE FVHHHSLVDA DFLLFKYNGN 60 SEFYVKVFGR NGLKKRKPKD NKVFSTHVKE ETETEIEEEK NRTQSTSDCK RKFSEMAAER 120 TRRSVRRSGG SVSKWRRATC SSGGNQFKSR HSTVTKYPDQ ECKMDKAPAF VKPKNPYFVV 180 LMTRTALYQV YVHRLVLKVH KIKLQENTNL RDERGKLWPV KVNYKKDGRI TINDGWLDFH 240 RKHNVAMGDK IIFELMPTEN NLCNLIQVVI DKKQVTPRPR RHQSWSDVDH Q

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020537323.1	0.0	putative B3 domain-containing protein At5g66980 isoform X1
TrEMBL	A0A067K6W5	0.0	A0A067K6W5_JATCU; Uncharacterized protein
STRING	cassava4.1_022865m	1e-90	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14322	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	3e-23	B3 family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]