PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02864.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 161aa    MW: 16739.8 Da    PI: 9.1852
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02864.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.7e-103659427
                   ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                   ++C ++ + G+Ck+G+ CkF H++
  Jcr4S02864.20 36 PPCTHYTQRGQCKFGPACKFDHPM 59
                   89********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.7463260IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-53259IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-83559IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-63562IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-53757IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MIFVHALAHS YKVVKANFEE RSSILIVIYK HLKGAPPCTH YTQRGQCKFG PACKFDHPMG  60
TLSYSPSASS LADMPVAPYP VGSTIGTLAP SSSSSELRPE LISGSSKDSS STRMSSSMST  120
SSGLVGSTFS KIGPVSHSGV QQSSQSSGAS SSSSMEAHTS S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012069378.17e-78zinc finger CCCH domain-containing protein 34
SwissprotQ5NAW27e-28C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A067L7C52e-76A0A067L7C5_JATCU; Uncharacterized protein
STRINGcassava4.1_024226m3e-59(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.26e-19C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]