PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02833.100
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family SBP
Protein Properties Length: 963aa    MW: 106899 Da    PI: 6.7072
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02833.100genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.51.4e-41156233178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqve+C +dls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Jcr4S02833.100 156 VCQVEDCGTDLSNAKDYHRRHKVCEMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 233
                     6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.6E-33151218IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.214154231IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.89E-39155236IPR004333Transcription factor, SBP-box
PfamPF031106.9E-30157230IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.18E-7753862IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-6753864IPR020683Ankyrin repeat-containing domain
CDDcd002041.85E-7755862No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    Send to blast
MEARFGGEAQ AHHFYSTGAT NLRAVGKRSL EWDLNDWKWD GDLFIANPLN PVPSGGMDRQ  60
FIPLATGISV NGNSSNSSSS CSDEVNLGIE KGKRELEKRR RVIVIEDDNL HGEEVGSLSL  120
KLGGHGYPVS EREMGNWEGN SGKKTKLVGG SMSRAVCQVE DCGTDLSNAK DYHRRHKVCE  180
MHSKASKALV GNVMQRFCQQ CSRFHVLQEF DEGKRSCRRR LAGHNKRRRK TNPDAVANGT  240
SLNDEQTSSY LLISLLRILS NMHSNRSDQV TDQDLLSHLL RSLASHTIDH GGRNISGLFQ  300
ESRDVLNDGT SFGNSEQVGH VHGANGATIQ TSSSIKPSIP NNYPAFSEVR DITGGQVKMN  360
NFDLNDIYID SDDGAEDIER SPVPTNMGTS SLDCPSWVQQ DSHQSSPPQT SGNSDSASAQ  420
SPSSSNGDAQ SRTDRIIFKL FGKEPNDFPL VLRAQILDWL SHSPTDIESY IRPGCVILTI  480
YLRQAETKWE ELCCNLSSSL SRLLDVSDDA FWRTGWVYIR VQHQIAFVYN GQVVVDTSLP  540
LRSSSYSRIL SVKPIAISAS ERAEFVIKGI NLSRPTTSIS GEDSLRCITS GIFLSNTTHP  600
WFWCNMLNLW TYTLVCALRW DYIEDQGFSS TFFPFIVAEE DFCSEIRMLE NVLDFTETNA  660
DVNGIGKMEA KNQAMDFIHE IGWLLHRSQL KYRLADLDPY TDLFPLKRFK WLMEFSVDHE  720
WCAVVKKLLN LLFNGVIGIG EHSSLNVALS EMGLLHRAVR KNSRSLVELL LRYVPEKSGA  780
VNNLLIGGSS ENFLFRPDVA GPAGLTPLHI AAGKDGSEDV LDALTDDTGM VGIEAWKNAR  840
DSTGFTPEDY ARLRGHYSYI HLVQKKINKK PAVGHVVLDI PGTLPDCSIN QKQNEGVSTS  900
FEIGQTAIRP IQRSCKLCHQ KLDYVTAGRS LLYRPAMLSM VAIAAVGIVG LRNKLRSSQP  960
DGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-33150230484squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197101KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082979.10.0squamosa promoter-binding-like protein 1
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A067K9350.0A0A067K935_JATCU; Uncharacterized protein
STRINGcassava4.1_000974m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]