PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02369.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 490aa    MW: 54267.1 Da    PI: 6.0877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02369.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-13347393455
                    HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Jcr4S02369.30 347 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 393
                    799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.0E-4335220IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-18346413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.01E-14346397No hitNo description
PfamPF000102.8E-10347393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-18347408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MVESVIGAEA CEYFSSLASN NVLADLVSPT CNLGLQQGLR QVVDNSNWNY AIFWCVSSLK  60
SGESILTWGD GVFRSSDGGG AGKENSIGDV KLEGVEKREE VKKRVLRKLH SCFNLSASDN  120
YAAKVDWVSD LEMFYLTSMY FTFRCDSASF PADSYKSGRP IWASDVISCL EHYQLRSVLA  180
RSAGLQTVVF LPAKSGVVEL GSVKSVPEEH NIIEMTKTIF GVSNVVQAKA CPKIFGRELS  240
LGGSKSQSIT INFSPKVEDD LIFTSESYAE AIGTNPAYGS TSNGCTSNSN EGKLFPHLNQ  300
MNVSGFNNES TATGIEQPKD DLSPQPDERK PRKRGRKPAN GREEPLNHVE AERQRREKLN  360
QRFYALRAVV PNISKMDKAS LLGDAITYIT DLQMKIRVLE TEKEMTNNMQ KPPEIDFHTR  420
QDDAVVRFSC PLDAHPISSI LETFREHQIS AQECNVSMTE NDKIVHTFSI RTQSGAAEQL  480
KEKLEAALSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-28341420281Transcription factor MYC2
5gnj_B1e-28341420281Transcription factor MYC2
5gnj_E1e-28341420281Transcription factor MYC2
5gnj_F1e-28341420281Transcription factor MYC2
5gnj_G1e-28341420281Transcription factor MYC2
5gnj_I1e-28341420281Transcription factor MYC2
5gnj_M1e-28341420281Transcription factor MYC2
5gnj_N1e-28341420281Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328336RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086017.10.0transcription factor bHLH3
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A343IVG00.0A0A343IVG0_HEVBR; LMYC14
STRINGcassava4.1_006027m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-164bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]