PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S02295.20 | ||||||||
Common Name | JCGZ_24071, LOC105650745 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 331aa MW: 36871.3 Da PI: 6.5117 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.7 | 4.6e-21 | 163 | 213 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge Jcr4S02295.20 163 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 213 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.70E-34 | 162 | 222 | No hit | No description |
SMART | SM00380 | 4.4E-38 | 163 | 226 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.235 | 163 | 220 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-32 | 163 | 221 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-23 | 163 | 221 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.0E-11 | 164 | 175 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-14 | 164 | 213 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 186 | 202 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 331 aa Download sequence Send to blast |
MAAAIDIYNS KTAPVFSVMD PCREELMKAL EPFMKSASPT SPSSSFSLSP PPFPSCSYHS 60 PICSSQPNFQ PEACSPSSTH VFSQGFSGYN QMGFEQTGSI GLNHLTPSQI LQIQAQIHFQ 120 QQQQQIPNLS SNSHLLHNQR LSYLAPKPVS MKQSASPSKP TKLYRGVRQR HWGKWVAEIR 180 LPKNRTRLWL GTFDTAEEAA LAYDKAAYKL RGEFARLNFP HLRHQGDFGD YKPLHASVDA 240 KLQAISPMKA IKEEDYSLKG ELKREIENLG AEDYRVEISS AAASSDESLA GSSSPQSEIS 300 FLDFSDSSQW DETENFGLEK YPSVEIDWAA L |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 162 | 220 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012093083.1 | 0.0 | ethylene-responsive transcription factor RAP2-4 | ||||
Swissprot | Q8H1E4 | 3e-80 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A067LEQ3 | 0.0 | A0A067LEQ3_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_010367m | 1e-154 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-57 | related to AP2 4 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 105650745 |
Publications ? help Back to Top | |||
---|---|---|---|
|