PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02028.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 318aa    MW: 36048.3 Da    PI: 10.4108
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02028.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.2e-151195194
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
             B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                   ffkvl   + + ++ l +p  f+++++++   +k  tl+  +g+s  v++   + +++y++++GW+ Fvk +gL++ Df+vF l+++ +f+  v
  Jcr4S02028.10 11 FFKVL--LSDFMEK-LKIPPAFVKKFKKI--MPKAPTLKPNEGKSCGVTI--VNEGDSYFFKRGWNTFVKNQGLETSDFLVFNLVDEITFQ--V 95
                   78888..5555555.99*********877..56679999***********..99*****************************99866663..3 PP
2B358.31.4e-181872651291
                    HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
             B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                    k  +lv+pk+fa++ +++++   +++++d++grsW vk+++   ++++++ ++ GW++F  an+L +gD++vF+++ +++  
  Jcr4S02028.10 187 KY-NLVMPKDFANKTKLVSK--EEIVMKDPKGRSWPVKVNIlvVQRGCQVRFGLGWSQFYGANELATGDTCVFHFIAEKGNL 265
                    44.49*******99999954..58***************8778888889*************************99865554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-186103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-207103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.4488101IPR003340B3 DNA binding domain
CDDcd100174.54E-10998No hitNo description
SMARTSM010191.8E-511101IPR003340B3 DNA binding domain
PfamPF023629.4E-131196IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-19170272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-19173266IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.31175274IPR003340B3 DNA binding domain
CDDcd100175.88E-14176272No hitNo description
SMARTSM010195.9E-9178274IPR003340B3 DNA binding domain
PfamPF023621.4E-15187265IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MARKPKQVPT FFKVLLSDFM EKLKIPPAFV KKFKKIMPKA PTLKPNEGKS CGVTIVNEGD  60
SYFFKRGWNT FVKNQGLETS DFLVFNLVDE ITFQVVIYGR TGCEKDVKVA SDNERVNDSS  120
QSSASSAEEE IKIKKQGFKR RGSPLPCRFK TPQASARTAD KDKVTETIRS LKRKNPYFVA  180
VLKKYQKYNL VMPKDFANKT KLVSKEEIVM KDPKGRSWPV KVNILVVQRG CQVRFGLGWS  240
QFYGANELAT GDTCVFHFIA EKGNLIEVEI HKEGVRGVRT GPAKSLSSVK SXXXXXXXXX  300
XETFLLVYKC HSYNQSIT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079138.10.0B3 domain-containing protein Os01g0723500 isoform X1
TrEMBLA0A067KHW40.0A0A067KHW4_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-15B3 family protein