PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01651.60
Common NameJCGZ_13970, LOC105642565
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 314aa    MW: 35539.3 Da    PI: 6.0807
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01651.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-1976124355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Jcr4S01651.60  76 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 124
                    9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.55E-2275133IPR016177DNA-binding domain
SMARTSM003802.7E-3875138IPR001471AP2/ERF domain
PROSITE profilePS5103223.77575132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-3275133IPR001471AP2/ERF domain
PfamPF008476.5E-1276124IPR001471AP2/ERF domain
PRINTSPR003678.3E-127687IPR001471AP2/ERF domain
CDDcd000181.32E-3376133No hitNo description
PRINTSPR003678.3E-1298114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MCGGAIIADL IPRNRGRGVS SSDLWPESAF SKLNPFQSYP SSFGNHDSFT LKRSQPASGD  60
RQVEKTPKKR QRKNLYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDREAR  120
KIRGKKAKVN FPNEDDSYTI SQNHLNGHNH RNNPPFYQPL TCNFNNTPKS YDFGFGYDLN  180
HIGSYNSNGM NTEPVIVSGE EISGSGSEEE AYSLIGNNYM GEVKVKQEEE KMEVEKVKNR  240
EVVIVDLESE QQESELQKLS EELMAYENYM KFYQIPYLDG QSTAPNTAPQ ESVVGNLWNF  300
DDDSVAAPVT SSAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2276132360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082821.10.0ethylene-responsive transcription factor ERF073
TrEMBLA0A067K8U50.0A0A067K8U5_JATCU; Uncharacterized protein
STRINGcassava4.1_012390m1e-174(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-38ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]