PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01524.10 | ||||||||
Common Name | JCGZ_05452, LOC105628031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 160aa MW: 18065 Da PI: 4.5754 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 14 | 43 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIar 29 +g+W++eEd +l+d+++++G+g +W + ++ Jcr4S01524.10 14 KGPWSPEEDSKLKDYIEKYGTGgNWIALPQ 43 79********************99976665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-11 | 5 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.4E-6 | 8 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.039 | 9 | 47 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 7.5E-7 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.88E-4 | 16 | 38 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDSKLKDYIE KYGTGGNWIA LPQKADRIIC TLFASIGSSQ 60 ISYGGRDIKQ EEMGLQSLIS NGYEENQKFM LSYNNGSENL NQWAEKASGY FGEITTTNPL 120 EYDLEDVKQL ISSSSGSNNS NYNNLLIDES KTREKFMYYY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034716 | 1e-173 | KM034716.1 Jatropha curcas clone JcMYB096 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012064720.1 | 3e-53 | transcription factor RAX2 | ||||
TrEMBL | A0A067LHA7 | 8e-52 | A0A067LHA7_JATCU; MYB family protein | ||||
STRING | cassava4.1_026964m | 2e-36 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-27 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Entrez Gene | 105628031 |
Publications ? help Back to Top | |||
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