PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00592.90
Common NameJCGZ_22668, LOC105646228
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 678aa    MW: 76391.3 Da    PI: 10.0925
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00592.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-101044237
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     ++W t E++ll++av+++G+++W++Ia +++ +Rt 
    Jcr4S00592.90 10 QPWGTLEELLLACAVNRHGTDSWDSIAMEVQ-NRTS 44
                     79*****************************.8886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-6749IPR009057Homeodomain-like
SMARTSM007171.6E-4864IPR001005SANT/Myb domain
SuperFamilySSF466897.8E-6948IPR009057Homeodomain-like
PfamPF002496.7E-101059IPR001005SANT/Myb domain
CDDcd001672.41E-51162No hitNo description
PROSITE profilePS500906.0981147IPR017877Myb-like domain
SMARTSM002974.0E-1564418IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.4E-16309421IPR001487Bromodomain
SuperFamilySSF473709.03E-19313420IPR001487Bromodomain
CDDcd043693.49E-15318413No hitNo description
PfamPF004394.2E-11328398IPR001487Bromodomain
PROSITE profilePS5001412.595328399IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MAKEHQTSAQ PWGTLEELLL ACAVNRHGTD SWDSIAMEVQ NRTSTLCSLT SQLCRDKFND  60
LKQRFMPQND TSASLVPMVD ELRKIRVEEL RREVHRRDVS IVSLELKVKR LEEERERSLN  120
VETDLATEKK PSPEKVTGES AAGDDSSEER DNRSFNESNS TGQQKADTSA VREQNDIVNG  180
EPGIKTEPEI KNENDRVRDG SDPKYWSRNG KLEEVDDDDK PPLDKKETEI KMSRTTGGLG  240
ESNELVESFG ESKREEKDKQ NSDVQSSASL SLKTKTRRRR SGSGSGNVLG VGSSSGEEPE  300
GGDEVSPATK QTPAVKSESL VKLIGIIRSH RLGSVFERRL RSQESERYRK LIRQHMDLQT  360
IQLRLDKRVY SSCIQKFFRD LLLLFNNAII FFRKNSPENL AACELRAIVW KEMTEKLRKP  420
EPQPIIVKPF KPVIPEPKQQ PKPVSLSKPN RSSSTIVVCG KAKSLSENAT KKVDSKKERV  480
IEEKPKSSAK KNEASLVKIE DKSIKKKRTK DRTVSSNHKV SNTSNKNGEI KHQYGGNELS  540
SHDALEMKVE RKGSTTRKRQ GAASFLKRMK QNSPSEVTEE DDDDDGDDND GDDSSEEESK  600
NVKGKEEKGR KGRNREPIIE RITRSSRGRG AREESGRGKR NLGRPPKKQA ESTVESGKRR  660
RDNGCSEGGG RAKKRSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087433.10.0uncharacterized protein LOC105646228
TrEMBLA0A067JQL80.0A0A067JQL8_JATCU; Uncharacterized protein
STRINGcassava4.1_002976m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.14e-32DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]