PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00356.10
Common NameJCGZ_06802, LOC105634722
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 377aa    MW: 43019.6 Da    PI: 6.1103
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00356.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011303325123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk F  + + ++H +++
  Jcr4S00356.10 303 FMCRKCGKAFAVRGDWRTHEKNC 325
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64219246IPR007087Zinc finger, C2H2
SMARTSM003550.58219241IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.8E-6219238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
SMARTSM00355180266298IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.73E-6285323No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5299323IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808303323IPR007087Zinc finger, C2H2
SMARTSM0035549303323IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MADPYSNFFS GWFKFNNNMN TNTNSNLNPF LHHYPSQIPS LPQQPEITFL YKSFDYVNQN  60
HSFFHNQTRP PSPPLREALP LLRLTPTREE KDQEQENQEL LDQENQELQI SCTTGMDMLG  120
KDQERSSTSF STSGFSANNN NNDEEEDQEE EEDDTVTVAL HIGLPSPSAA EIASVLSSSS  180
DVTHEKDGDD SNGYPINRLN KGQYWIPTPS QILIGPTQFS CPVCCKTFNR YNNMQMHMWG  240
HGSQYRKGPE SLRGTQPTGM LRLPCYCCAV GCRNNIDHPR AKPLKDFRTL QTHYKRKHGI  300
KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF GNGHAAYGID  360
GFEEEDDPAS EVEQDND
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073010.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-145ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A067KQT60.0A0A067KQT6_JATCU; Uncharacterized protein
STRINGcassava4.1_010785m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-139C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]