PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00215.30
Common NameJCGZ_05274, LOC105650341
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 612aa    MW: 68434.7 Da    PI: 10.4807
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00215.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.3e-111161346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46
                      W t+E++ll++avk++G ++W+++a +++          t+++c+ ++++
    Jcr4S00215.30 11 TWGTWEELLLACAVKRHGFKNWDSVAMEVQtrsslphVLTTAENCQQKYND 61
                     6*****************************777766644577777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-4862IPR009057Homeodomain-like
SMARTSM007173.2E-6865IPR001005SANT/Myb domain
SuperFamilySSF466891.88E-5969IPR009057Homeodomain-like
PfamPF002492.8E-101161IPR001005SANT/Myb domain
CDDcd001672.63E-71162No hitNo description
SMARTSM002979.0E-14252361IPR001487Bromodomain
SuperFamilySSF473708.11E-15259366IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.5E-13260364IPR001487Bromodomain
CDDcd043693.12E-12263356No hitNo description
PfamPF004391.6E-8267344IPR001487Bromodomain
PROSITE profilePS5001411.215271342IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MEKQNNNHTH TWGTWEELLL ACAVKRHGFK NWDSVAMEVQ TRSSLPHVLT TAENCQQKYN  60
DLHRRFTTTT IFNQNQEDKE DIVKTNNNHG NNINNNNNSG DKVANIPWLE ELRKLRVAEL  120
KQEVQRYDIS ILSLQLKVKR LEEEREKSAQ SNQNDGGPIP DLQRESSQND KKYEPEKERI  180
GPPPATNLTE KIGETAPVLS GSNSKPVRGG EESHELGDSA TQLSSEVQSS ASLGSKRKRK  240
GRKRREDVGG DGIKGATVKS EPLVTLMEII RSNRHGSFFE GRLESQETEV YKNLVRQHLD  300
LETIQTRLEQ GSYASSNLSF YRDLLLLFNN AIVFFPKTSN ESHAAYELRS LVTNEMKKET  360
QKSDSTVAPL DIPPQPKSEP ERSDSLLAKH KASAPIVVCR KRSSLSAKPS PLSFVQKIEH  420
QQQSSDNEPV SDLKPLAVEQ SSLKIESKEK PVTGTRSSRR SNKNLVKSTN TPSKKPNVSP  480
VTKVSTADKP ETPKIDKKKA EPSSLDKKRS AVDFLKRIKK NSPVEVSKKN TRGAANGAGE  540
RKRDSPGKGE KGKERVSRRN GDDKQMEESS PSKKNLGRPT KKGAEASKVS GKHGRDSGGK  600
EVAKRPKKRS RR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238245RKGRKRRE
2603611KRPKKRSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092616.10.01-phosphatidylinositol 3-phosphate 5-kinase
TrEMBLA0A067J9F80.0A0A067J9F8_JATCU; Uncharacterized protein
STRINGXP_002512156.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-111DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]