PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00137.180
Common NameJCGZ_01197, LOC105645636
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 374aa    MW: 41670.9 Da    PI: 4.5815
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00137.180genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.4e-1875125155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta++Aa a+++a+k+++g
  Jcr4S00137.180  75 CNYRGVRQRT-WGKWVAEIREP---N-RgPRLWLGTFPTAYDAALAYDEAAKAMYG 125
                     56*****999.**********8...2.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1275125IPR001471AP2/ERF domain
CDDcd000185.56E-3275135No hitNo description
PROSITE profilePS5103221.58876133IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2076133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-3076134IPR001471AP2/ERF domain
SMARTSM003801.2E-3776139IPR001471AP2/ERF domain
PRINTSPR003673.9E-97788IPR001471AP2/ERF domain
PRINTSPR003673.9E-999115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGQGYNVSSM PMEHTRKRRR RDSTCSVAET IQKWKEYNEF LDSCPNGDKP VRKIPAKGSR  60
KGCMRGKGGP DNSRCNYRGV RQRTWGKWVA EIREPNRGPR LWLGTFPTAY DAALAYDEAA  120
KAMYGNLARL NFPELSNSTS SSKDYMSSTT PSGYSSVATP AGSDSTTTSN HSEVCAFDDT  180
KEHVVKIENG EGESKIKPEY PAVTDLVSPR CTPKQEVKNE EDDAKIPETK VPMKDDHKIP  240
EIEVAVKDDL QHESKDDGTL NIEDYGWPNG LEGADFWKNF TVDEMFSVDE LLGAIDKNPL  300
DLDGQMLSTD NSDLQNDVVT PPLDLSFQLH SPYSKFNGNG NGDYGFDFLE PGRQEDNNIP  360
LDDQGFFSLG GFET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1976133260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-1876138568ATERF1
3gcc_A1e-1876138568ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11519RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086678.10.0dehydration-responsive element-binding protein 2C
TrEMBLA0A067L8G70.0A0A067L8G7_JATCU; Uncharacterized protein
STRINGcassava4.1_029110m1e-160(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-49ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]