PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00017.200 | ||||||||
Common Name | JCGZ_25903, LOC105648259 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C2H2 | ||||||||
Protein Properties | Length: 364aa MW: 40944.7 Da PI: 7.2394 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 284 | 306 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Jcr4S00017.200 284 FMCRKCGKAFAVRGDWRTHEKNC 306 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.38E-6 | 265 | 304 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-5 | 280 | 304 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.808 | 284 | 304 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MADPYSNYFN GWYNLNHLHH LSASTSSSSP SSINPSIYAS YGCNMYTSGS IFNNNICNNS 60 SLLHYQSSPP SPPIKEALPL LSLSPTRHDD RQESSCTVME VDKNNKLLEK EESFFGDDES 120 VGVALHLGLP SPSSADLISS SLSMSSTEIS SDKEEVTVAN SGYLSTSLNK GQYWIPTPAQ 180 ILIGPTQFSC PLCFKTFNRY NNMQKKSETL HSYPLHMHMW GHGSQYRKGP ESLRGTQPTA 240 MLRLPCYCCA PGCRNNIDHP RSKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR 300 THEKNCGKLW YCTCGSDFKH KRSLKDHIKS FGHGHAAYGI DSFEEEEEEE EPASEIEQDN 360 ESTQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020540639.1 | 0.0 | zinc finger protein WIP2 isoform X1 | ||||
Swissprot | Q9SVY1 | 1e-136 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A067JE16 | 0.0 | A0A067JE16_JATCU; Uncharacterized protein | ||||
STRING | XP_002513471.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-120 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105648259 |
Publications ? help Back to Top | |||
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