PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00001.70 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ERF | ||||||||
Protein Properties | Length: 276aa MW: 31346.8 Da PI: 5.0471 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 120 | 169 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp g+r r +lg+++taeeAa +++a+ kl+g Jcr4S00001.70 120 KYRGVRQRP-WGKWAAEIRDP---GRRVRLWLGTYDTAEEAAMVYDNAAIKLRG 169 8********.**********8...556*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-30 | 119 | 177 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.31E-33 | 120 | 176 | No hit | No description |
Pfam | PF00847 | 6.2E-14 | 120 | 169 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-22 | 120 | 177 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-38 | 120 | 183 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.052 | 120 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-11 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-11 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MMEQSILCPM KYTEHKQVTK KFTKPSLKPR KDDRNRLEHN PPRVVRISVT DPDATDSSSD 60 EEGELFGRQR VKRYVNEISI EEGCKEIIPI ANGRKRAGTE LPAAHRRLKL NTANSNNGRK 120 YRGVRQRPWG KWAAEIRDPG RRVRLWLGTY DTAEEAAMVY DNAAIKLRGP DALTNFMTPP 180 RREEAAEAET EQVEEKTETN ATSTSGYESG GPSLFDDDTI TKTTSNIVLQ ETISSHEDFS 240 DIFADMPQDF GSFNHQEDDF FQDIGDLFFS EPLVAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 118 | 176 | 3 | 62 | ATERF1 |
3gcc_A | 1e-20 | 118 | 176 | 3 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012090126.1 | 1e-144 | ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A067JQB6 | 1e-142 | A0A067JQB6_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_011246m | 1e-110 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 5e-56 | cytokinin response factor 4 |