PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc004457.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 194aa MW: 21474.9 Da PI: 8.0723 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.6e-19 | 5 | 55 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+Wv+eIr+p +r++lg+f taeeAa+a+++a+ ++g Itr_sc004457.1_g00001.1 5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAILMNG 55 59*******9.**********8.....334**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.59E-35 | 5 | 65 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-33 | 6 | 64 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.102 | 6 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.3E-40 | 6 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-20 | 6 | 64 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-12 | 6 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010143 | Biological Process | cutin biosynthetic process | ||||
GO:0010166 | Biological Process | wax metabolic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MVQSKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFETAE EAARAYDEAA ILMNGRNAKT 60 NFPVAANKDG KEDKSSSSTA SSSSSSSSSL SAILSAKLRK CCKSLSPSLT CLRLDTENSN 120 IGVWQKRAGT SSDSNWVMTV ELGNKQQPPT KQESLSSETS EHTRDAVIVD DGNQTVNEEE 180 KIALQMIEEL LNEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-17 | 2 | 67 | 1 | 67 | ATERF1 |
3gcc_A | 1e-17 | 2 | 67 | 1 | 67 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU171419 | 1e-96 | GU171419.1 Puccinia kuehnii microsatellite Stv_Puk_51 sequence. | |||
GenBank | GU171551 | 1e-96 | GU171551.1 Ipomoea batatas microsatellite Stv_Ipb_169 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019150136.1 | 1e-103 | PREDICTED: ethylene-responsive transcription factor WIN1 | ||||
Swissprot | Q9XI33 | 6e-79 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A314USV8 | 2e-87 | A0A314USV8_PRUYE; Ethylene-responsive transcription factor WIN1 | ||||
STRING | XP_010250110.1 | 5e-86 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1352 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 1e-66 | ERF family protein |