PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003420.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 670aa    MW: 74224.9 Da    PI: 10.3724
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003420.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-091245236
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                               W+t+E++ll+ avk++G ++W+++a +++ +R+
  Itr_sc003420.1_g00002.1 12 TTWSTWEELLLAFAVKRHGLRDWDSVAMELQ-NRC 45
                             68*****************************.998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.655664IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-6766IPR009057Homeodomain-like
SuperFamilySSF466897.26E-7869IPR009057Homeodomain-like
SMARTSM007170.00181066IPR001005SANT/Myb domain
PfamPF002494.5E-81145IPR001005SANT/Myb domain
CDDcd001671.71E-51363No hitNo description
SMARTSM002976.2E-1094409IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.2E-15303427IPR001487Bromodomain
CDDcd043694.02E-15303404No hitNo description
SuperFamilySSF473708.5E-17305420IPR001487Bromodomain
PROSITE profilePS5001412.444313390IPR001487Bromodomain
PfamPF004396.5E-10324392IPR001487Bromodomain
PROSITE patternPS006330327382IPR018359Bromodomain, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MLMKATETRK KTTWSTWEEL LLAFAVKRHG LRDWDSVAME LQNRCSIPAV ITAQICKDKY  60
HDLHRRFMNN DAADGDAEGG RVGGVGAVAI PWLEELRQLR VAELKQEVHR YDLSIQSLQL  120
KAKRLEEREQ SFRESKDVSV EPDLEDDRKE QRSENDENNG GRETSAGKDV SFSCKDSDRE  180
NRSFNESNST ENRRTGEKLG PDSVPIKPDP EAKPVWEEDS CNDSSDTHKA SKRKTDADAE  240
LRDSVSESKE GTKESSDVQS SASLTERRRK RADAGGGRMT TTAAASPSPP AVSAKRGGAV  300
KPEALVGLLD IIRSHKHGQV FQRRLDSQVF NATQKTEDYK KAIRRHVDLE TVQARIDDGS  360
YSSCSTRFYL DLLLLFNNAI VFFPKSSLES TAAHQLRDLV MKELKKKKNQ ITSTEPSPEP  420
SSTKVQQPKL ELERSDSLLA KHKSTAPIVV CRKRSSISGG KTATSGNKQG KLSDEKPKPP  480
LSQKLAVKSS SSNPDEDGSS TKLKMKEKPV TGVRSTRRSS KGNPNPSQST AKQTGGEAAK  540
TDKKEEVITT DKKRGAADFL KRMKKDSQGT MAVVSVKNSS DDSKASSRRE QQKRKQQVTE  600
ERKDGPVRRS SGGGNGKKEV AAEESSPAKR NVGRPPKRGR DAAAAPEKRG KETSADKEDS  660
SKRPKKRTRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1661669KRPKKRTRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168125.10.0PREDICTED: uncharacterized protein LOC109163870
TrEMBLA0A2G2XRP40.0A0A2G2XRP4_CAPBA; Uncharacterized protein
STRINGXP_009602840.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.15e-92DNA-binding bromodomain-containing protein