PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003354.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 428aa    MW: 45530.6 Da    PI: 6.9023
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003354.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.17.3e-22285347163
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              e+elkrerrkq+NRe+ArrsR+RK+ae eeL+ +v++L+aeN++Lk+e+++l++ ++klk e+
  Itr_sc003354.1_g00006.1 285 ERELKRERRKQSNRESARRSRLRKQAEAEELAMRVQSLTAENMTLKSEINKLTESSDKLKIEN 347
                              89*********************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.3E-30198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.7E-21136266No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-17278344No hitNo description
SMARTSM003381.1E-19285349IPR004827Basic-leucine zipper domain
PfamPF001701.2E-20285347IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.082287350IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-10288344No hitNo description
CDDcd147029.98E-21290338No hitNo description
PROSITE patternPS000360292307IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGSSEEGKSC KPEKSSSPTP ELGNIHVYPD WAAMQAYYGP RVTAPAYFNS TVAPGHAPHP  60
YMWGPPQVLN QLPMIPPYGA PYAAVYAHGG VYAPPGVPVG SHAQGHGVTV SPAVSEAMAV  120
ASLSADTSGK SSGNTDQGLI RKLKGFDGLA MSTRNGNTDN GEGGADQEHS QSADTEGSSD  180
GSNAAGAGEN NKKRSRETTP TDSDEKTPTR SYPNPALELS GATGKVIGMA VSPQTVAGKV  240
MGSVLSPNMA TGLEIKSPGA NMKASPTNVP QLGPQMPNDA WLQSERELKR ERRKQSNRES  300
ARRSRLRKQA EAEELAMRVQ SLTAENMTLK SEINKLTESS DKLKIENAAL MEKLKNEKLG  360
KMEELSLGKI ADKRPQPVTT VNLLARVDNS SSVNRNNDEE EEMYENNSSG TKLQLTDRSP  420
RTDAVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301307RRSRLRK
2301308RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194835.10.0PREDICTED: transcriptional activator TAF-1-like
RefseqXP_019194836.10.0PREDICTED: transcriptional activator TAF-1-like
SwissprotQ990891e-132CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A1U8DT230.0A0A1U8DT23_CAPAN; Common plant regulatory factor 1
TrEMBLA0A2G2YY320.0A0A2G2YY32_CAPAN; transcriptional activator TAF-1
STRINGXP_009765847.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.19e-70G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]