PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002785.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 293aa MW: 31996.4 Da PI: 5.6605 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.6e-18 | 50 | 99 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+++taeeAa a++ a+++++g Itr_sc002785.1_g00001.1 50 KYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTYDTAEEAACAYDSAARNMRG 99 8********.**********93....35999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-29 | 50 | 106 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-11 | 50 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-33 | 50 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-21 | 50 | 107 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.194 | 50 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.99E-30 | 50 | 106 | No hit | No description |
PRINTS | PR00367 | 3.0E-9 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-9 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MEDAIKRLNG FTDNSSSDLI PPLPKRCGGA TAAGSSPGNR RAASGGVIIK YRGVRRRPWG 60 RYAAEIRDPQ SKERRWLGTY DTAEEAACAY DSAARNMRGV KARTNFIYPP FPGAFHGGVD 120 NSNFPTIVSS HITNQITNPI ISLGDHQLPL IVNDNESHCS SFLTQITAQK PRSVSIFNPS 180 ITLSSLSSPS CADNGDCPKR RSGMEFFESE PPNSGLLGDV LNGFFPKPQA PKSEASTSMC 240 VDAKKSLDDD DDQNAGEFEK LNSSGFDSPP PLHFNGEFPA DDMFNYPEEH FNW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-19 | 50 | 106 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019160913.1 | 1e-150 | PREDICTED: ethylene-responsive transcription factor ESR2-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 1e-30 | DORNROSCHEN-like |