PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001803.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 148aa    MW: 16573.7 Da    PI: 4.8295
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001803.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.91.5e-19955147
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                             krie+k +r++tf+kRr+g++KKA+EL+  C+ae+avi fs  g+ +
  Itr_sc001803.1_g00002.1  9 KRIEDKAKRHTTFTKRRQGLFKKASELCKRCNAEAAVITFSLAGNAF 55
                             79***************************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.4E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.722161IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-16323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.28E-23374IPR002100Transcription factor, MADS-box
PfamPF003191.3E-191057IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MVRTKVEIKR IEDKAKRHTT FTKRRQGLFK KASELCKRCN AEAAVITFSL AGNAFAFGHP  60
SVNAVLARYD SYDANRGSVD DDDAESNARK VPEDDAVVVV SNEGLNDEDD DMKVEEMSME  120
ELEKLDSAME EMKRKVIARV NEIISLTG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170411.13e-78PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2U8UAB41e-100A0A2U8UAB4_IPOBA; MBP1
STRINGXP_009776268.14e-47(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-23AGAMOUS-like 61