PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001504.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | AP2 | ||||||||
Protein Properties | Length: 558aa MW: 60758.3 Da PI: 7.9626 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.1 | 4e-12 | 257 | 313 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a+ k++g Itr_sc001504.1_g00009.1 257 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAAIKYWG 313 78*******************87776664446655.77******************98 PP | |||||||
2 | AP2 | 47.1 | 6e-15 | 356 | 407 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Itr_sc001504.1_g00009.1 356 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 407 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.3E-9 | 257 | 313 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.82E-18 | 257 | 321 | No hit | No description |
SuperFamily | SSF54171 | 2.03E-14 | 257 | 323 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-12 | 258 | 322 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.266 | 258 | 321 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-23 | 258 | 327 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 259 | 270 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.4E-10 | 356 | 407 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-17 | 356 | 416 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.51E-24 | 356 | 417 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-18 | 357 | 416 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-33 | 357 | 421 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 357 | 415 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 397 | 417 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MKSLSNDGSG SNNNGNWLGF SLSSHSNNPS SVSSSSLAHS INYSNANAIY YGLEGENAAA 60 GLLSSLSVMP LKSDGSLCIM ESFNRSHPQG LVIPTPKLED FFGDAAMAPH HYDDRGGGMS 120 LSLDGQDFLN HLQDYSAMRG GHEVQLPTMP ENQMSATVGL KNWVARGFSG EHVMNENGGE 180 SANGAIGAMG YGDFQSLSLS MSPGSQSSCV TATHHQITPT VTQCLAPETK KRGADKVVDQ 240 KQIAHRKSFD TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQSRKGR QGGYDMEEKA 300 ARAYDLAAIK YWGPSTHINF PLENYHQEIE EMKNMSRQEY VAHLRRRSSG FSRGASIYRG 360 VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDASRYD 420 VERIMASSTL LTGEQARRSK NNITAAYNQK PGGGGVGDDF RSSCLGLEGT MDTMMMMKTT 480 NNINHLSNAS SLVNSVESSR EGSPDKTTPP PVHFLQSPAA PNFYGSSSSV SNVNSWISSA 540 AAAQLRCPVP VFAAWTDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019195586.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q38914 | 1e-154 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A1S3ZQP7 | 0.0 | A0A1S3ZQP7_TOBAC; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A1U7W6X1 | 0.0 | A0A1U7W6X1_NICSY; AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
STRING | XP_009769992.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-115 | AP2 family protein |