PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000879.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 354aa    MW: 40389.1 Da    PI: 4.4415
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000879.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.6e-36281202103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+++++ed++++e+isws+  nsf+v+d+++f++++Lp+yFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F 
  Itr_sc000879.1_g00012.1  28 FLSKTFDMVEDPSTDEVISWSSARNSFIVWDSHQFSTTLLPRYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFL 104
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                               g+k+ll++ikr++++
  Itr_sc000879.1_g00012.1 105 GGQKHLLKTIKRRRNA 120
                              *************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-3824117IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.9E-3424117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-6024117IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3128117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-192851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDEKVTVKLE EETPAPMEGL HEVGPPPFLS KTFDMVEDPS TDEVISWSSA RNSFIVWDSH  60
QFSTTLLPRY FKHSNFSSFI RQLNTYGFRK VDPDRWEFAN EGFLGGQKHL LKTIKRRRNA  120
AQSMHQQGAG PCIEIGYFGM EEELERLKRD RNLLMTEIVK LRQQQQSSRT QIMAMEERVR  180
NTERKHQQIM SFLAKIFSNP SFFQQYLDKY ALKKDQRRVE IGQKRRLTMT PSVENLQDID  240
SVALQSSQEP EADLEIETDV GSLISAALDN ESSSIMKQSS FASTSGTNTE DLVPDSIWDE  300
LLGEGLGNQA EEALMGNQAE VDVEVEDLVA AETPEWGDDL QDLVDHMGYL EPNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-252611727129Heat shock factor protein 1
5d5v_B4e-252611727129Heat shock factor protein 1
5d5v_D4e-252611727129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116LKTIKRR
2211217LKKDQRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154159.10.0PREDICTED: heat shock factor protein HSF30-like
SwissprotP411521e-165HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A1U7Y8801e-176A0A1U7Y880_NICSY; heat shock factor protein HSF30 isoform X1
STRINGXP_009799323.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-113heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]