PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000700.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 339aa    MW: 37771 Da    PI: 10.609
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000700.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.94.1e-262270149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             k i+n+  rqvtfskRr gi+KKA ELSvLC+a+vav++fs++gk++++
  Itr_sc000700.1_g00006.1 22 KMIDNHASRQVTFSKRRSGIFKKAGELSVLCGAQVAVVVFSPKGKVFTF 70
                             679*********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-341473IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.0391474IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-281590IPR002100Transcription factor, MADS-box
CDDcd002651.18E-341590No hitNo description
PRINTSPR004041.8E-211636IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001670IPR002100Transcription factor, MADS-box
PfamPF003195.3E-252470IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-213651IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-215172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MYGEKIFIKK KETRGRQKIA IKMIDNHASR QVTFSKRRSG IFKKAGELSV LCGAQVAVVV  60
FSPKGKVFTF GHPSFDAVVR RFQTAADALR VTQQTPSHPA VQEINALEEE RKRLLENKDG  120
SRGNAAAQDS VNVFWWNGDI EEMGREELGA FMAALEALKA NVILKARDRV IAERLENIEE  180
GNKIGGGWVD GGWSKILIRN VLSLILVNTF GPARRLTRSV PSVVYSFRVL RGVCEPRVDI  240
GICHVGRSGW LGMSLEDVLR RSKVNQRLLK EVNVKLVLST KHTLLWLVTE VNLLVPKLVC  300
TALSTHQGAH LILERYASSK EAELMNSQAH AKACLALRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A9e-1512791481PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B9e-1512791481PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182147.11e-102PREDICTED: agamous-like MADS-box protein AGL61
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-28AGAMOUS-like 61