PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000372.1_g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 134aa MW: 14885.2 Da PI: 8.7288 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.2 | 1.1e-14 | 20 | 61 | 2 | 46 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 +y GVr ++ +g+++AeIrd + ng +r++lg+f +aeeAa a+ Itr_sc000372.1_g00015.1 20 HYIGVRKRP-WGKYAAEIRDTTRNG--ARVWLGTFSSAEEAALAY 61 799******.**********54465..****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.2E-20 | 20 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-15 | 20 | 65 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-14 | 20 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.199 | 20 | 61 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-9 | 20 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MKQEPETFKP FCSDDDKEKH YIGVRKRPWG KYAAEIRDTT RNGARVWLGT FSSAEEAALA 60 YXXXXXXXXX XCGGGGFGLR SSGAVDAWAL ILPQFSGGES PRLNSRTQAV LRRRRAVVSG 120 GGVEGEAQEE MWER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-18 | 17 | 61 | 2 | 46 | ATERF1 |
3gcc_A | 1e-18 | 17 | 61 | 2 | 46 | ATERF1 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | A0A3Q7I5Y9 | 4e-21 | ERFC3_SOLLC; Ethylene-response factor C3 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 1e-16 | ethylene responsive element binding factor 2 |
Publications ? help Back to Top | |||
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