PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000320.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 315aa    MW: 35613.6 Da    PI: 7.3692
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000320.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.51.9e-41852042132
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 
                              +gkkdrhski T++g RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ +++ aikel    +++      ++ssss++    
  Itr_sc000320.1_g00007.1  85 TGKKDRHSKIKTAQGVRDRRMRLSVQIARKFFDLQDMLGFDKASKTIEWLFSNSNNAIKELSTKHNKNG-----GASSSSTE---- 161
                              79***********************************************************99944444.....23333333.... PP

                      TCP  88 gkaaksaakskksqksaasalnlak.esrakarararertrekmri 132
                              g+  ksa    ++++++a+ +nl++ esr+karararert+ek ++
  Itr_sc000320.1_g00007.1 162 GEIIKSA---MEDSSKTAECNNLQArESREKARARARERTKEKTKQ 204
                              2223333...2233333444566666*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3685153IPR005333Transcription factor, TCP
PROSITE profilePS5136935.50387145IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.105184201IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MFPATHENPN FLLHQNPNSS TPDEDPPFLY FPSPFLDDPP LSQIFSHHHH PQQQLKPKLL  60
QPINGEEPES TIKKRTSGLK PRKRTGKKDR HSKIKTAQGV RDRRMRLSVQ IARKFFDLQD  120
MLGFDKASKT IEWLFSNSNN AIKELSTKHN KNGGASSSST EGEIIKSAME DSSKTAECNN  180
LQARESREKA RARARERTKE KTKQFSSNPN NNNNNSLEMM EELGFPPSNP SPFLEEEPNS  240
SSYVTNNLDL VQEKRSPHEA SDSIASIFEC YHNLYAGISD SPNSFMGNFL GNWDLDTDPR  300
ILISPFSGNP DSNII
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366063.11e-68PREDICTED: transcription factor TCP12
RefseqXP_016574613.12e-68PREDICTED: transcription factor DICHOTOMA-like
TrEMBLA0A2G3CGG57e-68A0A2G3CGG5_CAPCH; Transcription factor TCP12
STRINGPGSC0003DMT4000193245e-68(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-29TCP domain protein 12