PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000300.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | TCP | ||||||||
Protein Properties | Length: 156aa MW: 17033.2 Da PI: 6.9571 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 68.1 | 2.9e-21 | 44 | 96 | 10 | 65 |
TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 k+ + g++RRvRl+a+caar+F+L++eLG+ +d++t+eWLl p++ Itr_sc000300.1_g00006.1 44 KR---GKGSGRRVRLPALCAARIFQLTRELGHRTDGQTVEWLLHHVHPSVFPSSYA 96 44...6799*************************************9998655444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 14.327 | 36 | 93 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 9.6E-17 | 49 | 90 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MEPYRYNATR EEDETFALSS PYPRPLSSSS TPAPLAPARP VTKKRGKGSG RRVRLPALCA 60 ARIFQLTREL GHRTDGQTVE WLLHHVHPSV FPSSYAAAPS TAAEDLSASP SPPYYPQIPA 120 ATPETEQDAV GATSFMALLM QAEKGDFVVK QEMGDY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019188972.1 | 2e-79 | PREDICTED: transcription factor PCF1-like | ||||
TrEMBL | A0A103XHF1 | 1e-29 | A0A103XHF1_CYNCS; Transcription factor, TCP |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 4e-16 | TCP family protein |