PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000181.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 491aa    MW: 55147.2 Da    PI: 6.1265
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000181.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like673.2e-21217267354
                  G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                              + +Wt+eLH++F++av+qL G+ +  Pk+i e+m+v+gLt+e+++SHLQ+ R
  Itr_sc000181.1_g00017.1 217 KFKWTEELHAKFMHAVNQL-GAGNCYPKEISEMMNVPGLTREKIASHLQRCR 267
                              789****************.999**************************988 PP
2Response_reg24.31.5e-095215012107
                              HHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTT..SEHHHHHHHHHHHTTTSEEEEEESTTT...HHHHHHHH CS
             Response_reg  12 ellrqalekegyeevaeaddgeealell..kekdpDlillDiempg..mdGlellkeireeepklpiivvtahge...eedaleal 90 
                              + ++++l++  y ev++++++++al  l   ++++D+++    +p+  ++   l + i++   kl ++ ++++++   +e a +a+
  Itr_sc000181.1_g00017.1  52 SMVAEILKQFSY-EVTVVESASAALLSLyhGKEKFDVLIANFYLPDkeVNVKLLEEAIKR---KLLVVQISDEKDengDEVARRAI 133
                              56899*******.************999556666************74454444455555...567777774433245899***** PP

                              HTTESEEEESS--HHHH CS
             Response_reg  91 kaGakdflsKpfdpeel 107
                              + G+  +l+Kpf+ + l
  Itr_sc000181.1_g00017.1 134 EQGVFLYLEKPFPVDML 150
                              ************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-1232182IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-1134173No hitNo description
PROSITE profilePS5011012.60936158IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.21E-838151No hitNo description
PROSITE profilePS5129411.465209271IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-21213267IPR009057Homeodomain-like
SuperFamilySSF466895.38E-14216267IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17217269IPR006447Myb domain, plants
PfamPF002491.5E-7219265IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MGEFAGFRHS FPQVTDGTNS SIGSLVFPPR RMHGVHVLLV ERRADFVANG TSMVAEILKQ  60
FSYEVTVVES ASAALLSLYH GKEKFDVLIA NFYLPDKEVN VKLLEEAIKR KLLVVQISDE  120
KDENGDEVAR RAIEQGVFLY LEKPFPVDML KYLWQHVYRE RRLMNHSTHQ ALDISMVAET  180
LMNGQNNIVF TDNQTATEFA TDSNNVNLVP TRRRGAKFKW TEELHAKFMH AVNQLGAGNC  240
YPKEISEMMN VPGLTREKIA SHLQRCRDNK WRPVEEHGNR RRSRTMQSTS QPRRPRHKKF  300
GLMPTVEELE ANNNGIMPPQ EQIVAAAPAA NNEISSQNGG NNNNYEYRSL MTVSTNSVTY  360
IDTGILQAVQ SSAGIIQDRR LLGEVQTHPI VADSVTNTDV GVFQTGQSSA GVLEIGQSSA  420
GTSHDPYRPQ LEEVQTHPVV TDSLNIDETA FVNSSPIPWQ FDDGLMFDDL LNIPEGMLPR  480
IFFGGQLNFP F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019200234.10.0PREDICTED: two-component response regulator EHD1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-27response regulator 2