PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000137.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 684aa    MW: 74500.5 Da    PI: 6.3843
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000137.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.91.5e-20217276155
                  G2-like   1 kprlrWtpeLHerFvea......veqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              kpr++W+ eLH++Fv a       + L  + +A+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Itr_sc000137.1_g00020.1 217 KPRVVWSVELHQQFVAAnydasrFNLL-STFEAVPKKILELMNVPGLTRENVASHLQKYRL 276
                              79*************995444444566.8889****************************8 PP
2Response_reg73.49e-25371451109
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+vdD+p+ +++l+++l+   y ev+ +  +e al +l+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++
  Itr_sc000137.1_g00020.1  37 VLVVDDDPTCLKILEKMLRTCLY-EVTKCNRAELALSYLRENKngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKN 120
                              89*********************.***************999999**********************6644.8************* PP

                              HHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                               + + +  Ga d+l Kp+ +e+l +
  Itr_sc000137.1_g00020.1 121 VVMKGVTHGACDYLIKPVRIEALKN 145
                              *********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.7E-16917676IPR017053Response regulator B-type, plant
SuperFamilySSF521722.56E-3434157IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.9E-4234177No hitNo description
SMARTSM004483.0E-2935147IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.50336151IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-2237145IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.84E-2638150No hitNo description
SuperFamilySSF466894.66E-14214280IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-22216281IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-17217276IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MNLGGGQVGK GMSATCSNAS WKSGDAVSDK FPAGLRVLVV DDDPTCLKIL EKMLRTCLYE  60
VTKCNRAELA LSYLRENKNG FDIVISDVHM PDMDGFKLLE HVGLEMDLPV IMMSADDSKN  120
VVMKGVTHGA CDYLIKPVRI EALKNIWQHV VRKRKHEWKD KDPEQSGSAD EGDRPQKPSD  180
DADYSSSVNE GNWKNSKKRK DEEDEAEERD DTSTLKKPRV VWSVELHQQF VAANYDASRF  240
NLLSTFEAVP KKILELMNVP GLTRENVASH LQKYRLYLRR LSGQGGLGNS FMGHPESPFG  300
SMSSLNGLDL QALAASGQIS AQSLATFQAA ALGSSVTKSA ISMPLVDQRN LFSFENPKSR  360
FGDGPPQLGN SSKQIGLLHG IPTTMEPKQL ASLHQSSPTF GGMSMQLNSQ VHQNNPLLMQ  420
MAQPQPRAQM VNDPNGSQAS RLPLSVPQPI LSSARAGGVL GGNSIVDNSC SAIHSSVSHA  480
PSTVAFSVNQ GTELQTNSYT TSNSGVSSLT SRGMLREQAN PDVKGSRGFV PSYDIFNDLH  540
QHKAQDWGLQ NVGSTFDPPP HHSNLQGILD PPPSVMAQHG FSSNQKSGQN RNAPINKDVF  600
LSGEQTGHGN NPMLGPQFNS LLGGNPVTIK TERLPDTSFQ NTLFSDQYGQ EDLMSALLKQ  660
QQDSLGPVEN EFGFDGYQLD NLPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-17216282464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180837.10.0PREDICTED: two-component response regulator ARR2-like isoform X3
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A2R6PJP60.0A0A2R6PJP6_ACTCH; Two-component response regulator
STRINGXP_009591694.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-178response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]