 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Itr_sc000067.1_g00013.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
LSD |
| Protein Properties |
Length: 185aa MW: 19736.8 Da PI: 8.2464 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000067.1_g00013.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 39.2 | 1.1e-12 | 7 | 30 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24
C+gCrt+L YPrGA++V+Ca+C++
Itr_sc000067.1_g00013.1 7 CNGCRTILLYPRGASNVCCAVCNA 30
**********************97 PP
|
| 2 | zf-LSD1 | 46.8 | 4.7e-15 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggCrtlL+ PrGA+sVRC++C+tV
Itr_sc000067.1_g00013.1 46 CGGCRTLLMHPRGATSVRCSCCHTV 70
************************9 PP
|
| 3 | zf-LSD1 | 48.9 | 1.1e-15 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Crt+L+YP GApsV+Ca+C+++
Itr_sc000067.1_g00013.1 84 CGNCRTMLMYPSGAPSVKCAVCHFI 108
***********************86 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000303 | Biological Process | response to superoxide |
| GO:0001666 | Biological Process | response to hypoxia |
| GO:0002240 | Biological Process | response to molecule of oomycetes origin |
| GO:0009626 | Biological Process | plant-type hypersensitive response |
| GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway |
| GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway |
| GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process |
| GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process |
| GO:0010618 | Biological Process | aerenchyma formation |
| GO:0043069 | Biological Process | negative regulation of programmed cell death |
| Sequence ? help Back to Top |
| Protein Sequence Length: 185 aa
Download sequence Send
to blast |
MQSQVVCNGC RTILLYPRGA SNVCCAVCNA LTPVPPPAME MAQLICGGCR TLLMHPRGAT 60
SVRCSCCHTV NLVPGPNQFA HVNCGNCRTM LMYPSGAPSV KCAVCHFITN VNAGDTRAPI 120
QPHTPNGTAT SSSMTPPTAT TRPQNQTVVV QNPMSVDESG KLRLACSIGK DEYRDDEYLH 180
LKCGK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
