PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000052.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 144aa MW: 15869.8 Da PI: 7.9184 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.2e-19 | 10 | 61 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y GVr ++ +g+++AeIrd + ng kr++lg+f +ae+Aa a+++a+++++g Itr_sc000052.1_g00001.1 10 SNYIGVRKRP-WGKYAAEIRDSTRNG--KRVWLGTFNSAEDAALAYDQAALAMRG 61 5699******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.22E-23 | 10 | 71 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.70E-28 | 10 | 70 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.3E-31 | 11 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.6E-14 | 11 | 61 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.918 | 11 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-35 | 11 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-9 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-9 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MEKDTSGKAS NYIGVRKRPW GKYAAEIRDS TRNGKRVWLG TFNSAEDAAL AYDQAALAMR 60 GTSACLNFPA ELVRKSLEEL DCKEGTSMAA ALKEKHKKRT RRGKGNSPSC EKEEERNNGV 120 LVFEDLGSDL LDELLSETSS SSCM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-27 | 8 | 69 | 2 | 63 | ATERF1 |
3gcc_A | 2e-27 | 8 | 69 | 2 | 63 | ATERF1 |
5wx9_A | 3e-27 | 12 | 72 | 15 | 75 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019185295.1 | 5e-88 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 4e-44 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1S4D1A2 | 2e-56 | A0A1S4D1A2_TOBAC; ethylene-responsive transcription factor 1B-like | ||||
STRING | XP_009609581.1 | 3e-57 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-27 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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